Publication – EON Project https://eon.elsi.jp Wed, 16 May 2018 04:52:09 +0000 en-GB hourly 1 https://wordpress.org/?v=5.8.12 https://eon.elsi.jp/wp-content/uploads/2015/09/cropped-logo-32x32.jpg Publication – EON Project https://eon.elsi.jp 32 32 Mineral Surface-Templated Self-Assembling Systems: Case Studies from Nanoscience and Surface Science towards Origins of Life Research https://eon.elsi.jp/mineral-surface-templated-self-assembling-systems-case-studies-from-nanoscience-and-surface-science-towards-origins-of-life-research/ https://eon.elsi.jp/mineral-surface-templated-self-assembling-systems-case-studies-from-nanoscience-and-surface-science-towards-origins-of-life-research/#respond Tue, 08 May 2018 09:37:49 +0000 https://eon.elsi.jp/?p=1846 Origins of life and astrobiology research has often utilized analytical tools and scientific knowledge from other research fields, including chemistry, biology, geology, planetary science, physics, and many more. For this reason, much of the advancement within our research field has been built upon the technological and theoretical advancement of other fields. Recently, the fields of nanoscience and surface science have made significant progress in technical and theoretical aspects. Additionally, many of the lessons learned from self-assembling systems (and also sometimes the systems themselves) studied in nanoscience are quite relevant to advancement of the knowledge of our own origins. For example, recent work in self-assembling short peptide systems provides a simple prebiotically-plausible molecule which is able to result in very complex architecture without the necessity of the formation of high-energy peptide bonds.

 

In the following review article by EON postdoctoral fellow Richard J. Gillams, and ELSI member Tony Z. Jia, the authors present various case studies from nanoscience and surface science. Each case study involves a templated self-assembled system induced by a mineral surface, one of the most common interfaces available in the cosmos, and also a likely very important participant in the initial development of early life on Earth. These self-assembling systems templated by mineral surfaces, which include nucleic acid secondary structures, peptide nanofibrils, and simple ordered organic monolayers, may also have been able to contribute to the emergence of functional, structural, and chemical diversity on an early Earth environment. Such self-assembling systems are also known to play a role in biomineralization processes, a mechanism by which organisms can produce minerals (such as teeth, bones, shells, etc.) for its own use.

 

We envision a model by which mineral surfaces on primitive Earth catalyzed the synthesis and/or adsorption of simple biomolecules (such as nucleotides), polymerization of monomers into polymers (such as peptides or nucleic acids), and eventual self-assembly (such as in peptide amyloid structures) of these molecules into supramolecular structures. these supramolecular self-assemblies could then have catalyzed the formation of new mineral surfaces, resulting in a circular autocatalytic cycle. It is very clear that the geology of our planet was affected directly by various non-living chemical processes while the Earth-life system was moving beyond primitive chemistries and into a living system early in its history, resulting in an interactive and symbiotic feedback loop in which geology and early pre-living systems were closely linked to one another even before life’s origin. We hope that through these various case studies of mineral-templated self-assemblies, researchers in the origins of life and astrobiology fields see the merit of incorporating ideas from the fields of nanoscience and surface science into their own research.

Synergistic cyclical model of mineral-templated self-assembling systems promoting mineralization.

Paper title: Mineral Surface-Templated Self-Assembling Systems: Case Studies from Nanoscience and Surface Science towards Origins of Life Research
Authors: Richard J. Gillams and Tony Z. Jia
Journal: Life 20188(2), 10; doi:10.3390/life8020010

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The language of exoplanet ranking metrics needs to change (on the nature astronomy) https://eon.elsi.jp/the-language-of-exoplanet-ranking-metrics-needs-to-change-on-the-nature-astronomy/ https://eon.elsi.jp/the-language-of-exoplanet-ranking-metrics-needs-to-change-on-the-nature-astronomy/#respond Fri, 03 Feb 2017 02:02:04 +0000 https://eon.elsi.jp/?p=1349 group-picture-lq

Elizabeth Tasker, Joshua Tan, Kevin Heng, Stephen Kane, David Spiegel & the ELSI Origins Network Planetary Diversity Workshop

We have found many Earth-sized worlds but we have no way of determining if their surfaces are Earth-like. This makes it impossible to quantitatively compare habitability, and pretending we can risks damaging the field.

See more at: http://www.nature.com/articles/s41550-017-0042

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Meta Musings on the Origins of Life (on the ASTROBIOLOGY MAGAZINE) https://eon.elsi.jp/meta-musings-on-the-origins-of-life-on-the-astrobiology-magazine/ https://eon.elsi.jp/meta-musings-on-the-origins-of-life-on-the-astrobiology-magazine/#respond Sun, 04 Dec 2016 21:52:47 +0000 https://eon.elsi.jp/?p=1313 In 1953, the chemist Stanley Miller cracked open one of the deepest mysteries of science. Working under his mentor Harold Urey, Miller electrified a mixture of water vapor and gases thought to make up early Earth’s atmosphere, and soon obtained a brownish soup of amino acids—the building blocks of proteins and the key ingredients of life. And so was born the field of prebiotic chemistry and with it the modern quest for life’s origin. – See more at: http://www.astrobio.net/news-exclusive/meta-musings-origins-life/#sthash.pUd4eQhW.dpuf

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Measurement of Ganymede’s tidal deformation can be an effective way to determine the presence/absence of a subsurface deep ocean worlds https://eon.elsi.jp/tidal-deformation-of-ganymede-sensitivity-of-love-numbers-on-the-interior-structure/ https://eon.elsi.jp/tidal-deformation-of-ganymede-sensitivity-of-love-numbers-on-the-interior-structure/#respond Thu, 14 Jul 2016 00:31:54 +0000 https://eon.elsi.jp/?p=1200 Our new paper has been just published on the Journal of Geophysical Research – Planets.

Tidal deformation of icy satellites provides crucial information on their subsurface structures. In this study, we investigate the parameter dependence of the tidal displacement and potential Love numbers (i.e., h2 and k2, respectively) of Ganymede. Our results indicate that Love numbers for Ganymede models without a subsurface ocean are not necessarily smaller than those with a subsurface ocean. The phase lag, however, depends primarily on the presence/absence of a subsurface ocean. Thus, the determination of the phase lag would be of importance to infer whether Ganymede possesses a subsurface ocean or not based only on geodetic measurements. Our results also indicate that the major control on Love numbers is the thickness of the ice shell if Ganymede possesses a subsurface ocean. This result, however, does not necessarily indicate that measurement of either of h2 or k2 alone is sufficient to estimate the shell thickness; while a thin shell leads to large h2 and k2 independent of parameters, a thick shell does not necessarily lead to small h2 and k2. We found that, to reduce the uncertainty in the shell thickness, constraining k2 in addition to h2 is necessary, highlighting the importance of collaborative analyses of topography and gravity field data.

 

Paper title: Tidal deformation of Ganymede: Sensitivity of Love numbers on the interior structure
Authors: Shunichi Kamata, Jun Kimura, Koji Matsumoto, Francis Nimmo, Kiyoshi Kuramoto, and Noriyuki Namiki
Journal: Journal of Geophysical Research, doi:10.1002/2016JE005071, 2016.
Read the paper here

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Complex Autocatalysis in Simple Chemistries https://eon.elsi.jp/1116-2/ https://eon.elsi.jp/1116-2/#respond Mon, 30 May 2016 07:18:55 +0000 https://eon.elsi.jp/?p=1116 I’ve just published a paper on my work with Takashi Ikegami and Simon McGregor on self-organisation in chemical systems, and the concept of autocatalysis. Autocatalysis means chemical self-production – a set of chemical species that can collectively produce more of the same set of species. What we found was that under some circumstances, chemical systems seem to “want” to become autocatalytic. The harder you try to make it for the system to find an autocatalytic system, the more clever it will be in coming up with one anyway. The reason for this has to do with thermodynamics, and the general tendency of all physical systems to seek a minimum of the free energy.

Virgo, N., Ikegami, T. and McGregor, S. (2016) Complex Autocatalysis in Simple Chemistries. Artificial Life 22(2), pp. 138-152. doi:10.1162/ARTL_a_00195

Read the paper here

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Astrobiology Journal Publishes a Strategy for Origins of Life Research https://eon.elsi.jp/astrobiology-journal-publishes-a-strategy-for-origins-of-life-research/ https://eon.elsi.jp/astrobiology-journal-publishes-a-strategy-for-origins-of-life-research/#respond Sat, 02 Jan 2016 05:45:21 +0000 https://eon.elsi.jp/?p=946 One of EON’s early activities was to host a workshop at the end of August 2015 where some 40 researchers (from 10 different countries) came to Tokyo to engage in an intense, lively, and hugely productive discussion on the nature of origins of life research itself.

We prompted the attendees to define what they thought the most pressing and interesting questions are for the field, and to come up with fresh and innovative ideas for making progress. As written elsewhere (at the ELSI blog pages) the meeting was a great success, and hot on its heels the attendees helped put together a unique and timely position paper summarizing both the outcomes of the workshop, describing components of an EON roadmap, and challenging the community to address a number of key issues.

Not only did the paper get written before the end of 2015, it was fast-tracked into press at the Astrobiology Journal?(with many thanks due to the journal’s Editor-in-Chief Sherry Cady) and published as a fully open-access document in the December 2015 issue.

The paper, “A Strategy for Origins of Life Research”, is freely available here. In the January 7th editon of Nature?there will also be a short Correspondence piece calling attention to this document and, we hope, bring broad attention to both origins of life science and EON’s goals.

Finally, the workshop effort created a number of ‘birds-eye’ views of the origins field. One of those was a concept map of the scientific approaches and categorizations in use, reproduced here. For the full details you can go to the paper itself.

GRAPHIC OVERVIEW-2.001

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