Publications

EON Research Members’ Publication List

 

 

  • Tony Z. Jia, Kuhan Chandru, Yayoi Hongo, Rehana Afrin, Tomohiro Usui, Kunihiro Myojo, and H. James Cleaves II (2019). Membraneless polyester microdroplets as primordial compartments at the origins of life Proceedings of the National Academy of Science USA, 116(32), 15830-15835. July 2019 https://doi.org/10.1073/pnas.1902336116life8020010

 

  • Marjorie A. Chan, Nancy W. Hinman, Sally L. Potter-McIntyre, Keith E. Schubert, Richard J. Gillams, Stanley M. Awramik, Penelope J. Boston, Dina M. Bower, David J. Des Marais, Jack D. Farmer, Tony Z. Jia, Penelope L. King, Robert M. Hazen, Richard J. Léveillé, Dominic Papineau, Kaitlin R. Rempfert, Mónica Sánchez-Román, John R. Spear, Gordon Southam, Jennifer C. Stern, and Henderson James Cleaves, II (2019). Deciphering Biosignatures in Planetary Contexts Astrobiology, 10.1089/ast.2018.1903. July 2019  https://www.liebertpub.com/doi/abs/10.1089/ast.2018.1903

 

  • Richard J. Gillams and Tony Z. Jia (2018). Mineral Surface-Templated Self-Assembling Systems: Case Studies from Nanoscience and Surface Science towards Origins of Life Research. Life, 8(2), 10. May 2018  http://doi.org/10.3390/life8020010

 

  • Fujishima, K., Wang, K. M., Palmer, J. A., Abe, N., Nakahigashi, K., Endy, D., & Rothschild, L. J. (2018). Reconstruction of cysteine biosynthesis using engineered cysteine-free enzymes. Scientific Reports, 8(1), 1776. Jan. 2017  http://doi.org/10.1038/s41598-018-19920-y

 

 

  • Laneuville, M, Kameya, M & Cleaves HJ. Earth Without Life: A Systems Model of a Global Abiotic Nitrogen Cycle. Astrobiology  (In Press)

 

 

 

 

 

 

 

 

 

 

  • Burrell, J., Dymond, M. K., Gillams, R. J., Parker, D., Langley, G. J., Labrador, A., Nylander, T. and Attard, G. S. Using curvature power to map the domain of inverse micellar cubic phases: The case of aliphatic aldehydes in DOPE. Langmuir 33(44), 12804 (ACS Editors’ Choice). Oct. 2017. http://pubs.acs.org/doi/full/10.1021/acs.langmuir.7b02998

 

 

  • Shu D*, Conway Morris S*, Han J, Hoyal Cuthill JF*, Zhang Z, Cheng M and Huang H (2017) Multi- jawed chaetognaths from the Chengjiang Lagerstätte (Cambrian, Series 2, Stage 3) of Yunnan, China. Palaeontology. Sept. 2017. DOI: 10.1111/pala.12325. http://onlinelibrary.wiley.com/doi/10.1111/pala.12325/full

*=corresponding authors

 

  • Supriya Krishnamurthy and Eric Smith. Solving moment hierarchies for chemical reaction networks. J. Phys. A: Math. Theor. 50:425002. Sept. 2017. https://arxiv.org/abs/1702.01364

 

  • Bartlett, S. J. Delving Deeper into Homeostatic Dynamics of Reaction Diffusion Systems with a General Fluid Dynamics and Artificial Chemistry Model. Proceedings of ECAL 2017: the 14th European Conference on Artificial Life, v. 15, p. 52-59. Sept. 2017.  http://cognet.mit.edu/proceed/10.7551/ecal_a_013

 

  • Moore E, Jelen B, Giovannelli D, Raanan H and Falkowski P. Metal Availability and the Expanding Redox Network of Microbial Metabolism in the Archean Eon. Nature Geoscience, 10, 629–636. Aug. 2017. doi: 10.1038/ngeo3006 https://www.nature.com/articles/ngeo3006

 

*=corresponding author

 

  • Bartlett, S. J. A Non-Isothermal Chemical Lattice Boltzmann Model Incorporating Thermal Reaction Kinetics and Enthalpy Changes. Computation, 5(3). Aug. 7, 2017 http://www.mdpi.com/2079-3197/5/3/37

 

  • Betul Kacar, Lionel Guy, Eric Smith, and John. A. Baross. Paleophenotype reconstruction of carbon fixation proteins as a window into historic biological states. Phil. Trans. Roy. Soc. A. July 2017. https://doi.org/10.1101/164038.

 

  • Eric Smith and Supriya Krishnamurthy. Flows, scaling, and the control of moment hierarchies for stochastic chemical reaction networks. Phys. Rev. E. June 2017. https://arxiv.org/pdf/1706.08386.pdf

 

 

 

 

  • Giovannelli D*, SM Sievert, M Hügler, S Markert, D Becher, T Schweder and C Vetriani*. 2017. Insight into the evolution of microbial metabolism from the deep-branching bacterium, Thermovibrio ammonificans. eLife 6: e18990 doi: 10.7554/eLife.18990 *Co-corresponding authors. April 2017.  https://elifesciences.org/articles/18990

*= corresponding authors

 

 

  • Keppel E, Minicante SA, Bonomo S, Capotondi L, Ceregato A, Fontaneto D, Froglia C, Petrocelli A, Taviani M, Abbiati M, Amori G, Angeletti L, Alessandra A, Austoni M, Badalamenti F, Baldrighi E, Belmonte M, Bergami C, Bernardi Aubry F, Boggero A, Boero F, Bolognini L, Borsetti AM, Camatti E, Camedda A, Caroppo C, Cecere E, Chiari M, Colangelo P, Como S, Coppa S, Di Lorenzo T, de Lucia GA, Domenichetti F, Donnici S, Eckert EM, Luciana F, Finotto S, Ghigliotti L, Giacobbe MG, Giovannelli D, Grati F, Guarneri I, La Cono V, Loru L, Luna GM, Magni P, Manca M, Marchetto A, Martinez A, Massi D, Messana G, Mirto S, Panfili M, Pansera M, Pantaleoni RA, Pipitone C, Piscia R, Prato E, Punzo E, Riccardi N, Rubino F, Salvalaggio V, Santelli A, Serra G, Sigovini M, Spagnolo A, Strafella P, Tagliapietra D, Taiti S, Vasapollo C, Vacchi M, Verdinelli M, Volta P, Yakimov M. 2017. Taxonomy work at CNR. CNR technical report, pp. 1-103. April 2017. https://doi.org/10.5281/zenodo.569874

 

 

 

  • Krüger H, Goesmann F, Giri C, Wright I, Morse A, Bredehöft JH, Ulamec S, Cozzoni B, Ehrenfreund  P, Gautier T, McKenna-Lawlor S, Raulin F, Steininger H, Szopa C. Decay of COSAC and PTOLEMY mass spectra at comet 67P/Churyumov-Gerasimenko. Astronomy and Astrophysics, Feb. 2017.https://arxiv.org/abs/1702.00192

 

  • Shu Zhang, Nancy Merino, Ning Wang, Ting Ruan, Xiaoxia Lu. Impact of 6:2 fluorotelomer alcohol aerobic biotransformation on a sediment microbial community. Science of the Total Environment, vol. 575; Jan. 2017; https://www.ncbi.nlm.nih.gov/pubmed/27756549

 

 

 

 

 

  • Ivan Laucio Paulino-Lima, Kosume Fujishima, Jesica Urbina Navarrete, Douglas Galante, Fabio Rodrigues, Armando Azua-Bustos, Lynn Justine Rothschild. Extremely high UV-C radiation resistant microorganisms from desert environments with different manganese concentrations. Journal of Photochemistry & Photobiology, B: Biology, Oct. 16, 2016. https://www.ncbi.nlm.nih.gov/pubmed/27614243

 

 

  • Eric  T. Parker, H. James Cleaves II, Jeffrey L. Bada, and Facundo M. Fernandez. Quantitation of α-hydroxy acids in complex prebiotic mixtures via liquid chromatography/tandem mass spectrometry. Rapid Communications in Mass Spectrometry, Aug. 2016. http://onlinelibrary.wiley.com/doi/10.1002/rcm.7684/abstract

 

  • Hyejin Youn, Logan Sutton, Eric Smith, Christopher Moore, Jon F. Wilkins, Iam Maddieson, William Croft, and Tanmoy Bhattacharya. On the universal structure of the human lexial semantics. Proceedings of the National Academy of Sciences, Vol. 113, no. 7, 1766-1771. http://www.pnas.org/content/113/7/1766.abstract

 

  • Shunichi Kamata, Jun Kimura, Koji Matsumoto, Francis Nimmo, Kiyoshi Kuramoto, & Noriyuki Namiki. Tidal deformation of Ganymede: Sensitivity of Love numbers on the interior structure. Journal of Geophysical Research: Planets, July 28, 2016. http://onlinelibrary.wiley.com/doi/10.1002/2016JE005071/full

 

 

  • Tiffany S. Louie, Donato Giovannelli, Nathan Yee, Priya Narasingarao, Walentin Starovoytov, Markus Goker, Hans-Peter Klenk, Elke Lang, Nikos C. Kyrpides, Tanja Woyke, Elisabeth Bini, and Max M. Haggblom. High-quality draft genome sequence of Sedimenticola selenatireducens strain AK4OH1T, a gammaproteobacterium isolated from estuarine. Standards in Genomic Sciences, Vol. 11, No. 66. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5052931/

 

 

  • Tim Taylor, Mark Bedau, Alastair Channon, David Ackley, Wolfgang Banzhaf, Guillaume Beslon, Emily Dolson, Tom Froese, Simon Hickinbotham, Takashi Ikegami, Barry McMullin, Norman Packard, Steen Rasmussen, Nathaniel Virgo, Eran Agmon, Edward Clark, Simon McGregor, Charles Ofria, Glen Ropella, Lee Spector, Kenneth O. Stanley, Adan Stanton, Christopher Timperley, Anya Vostinar, & Michael Wiser. Open-Ended Evolution: Perspectives from the OEE Workshop in York. Artificial Life, Vol. 22, No. 3. http://www.mitpressjournals.org/doi/abs/10.1162/ARTL_a_00210#.WL9-MjaSDdl

 

 

 

 

 

  • Donato Giovannelli, Guiseppe d’Enrrico, Federica Florentino, Daniele Fattorini, Francesco Regoli, Lorenzo Angeletti, Tatjana Bakran-Petricioli, Costantino Vetriani, Mustafa Yucel, Marco Taviani, & Elena Manini. Diversity and Distribution of Prokaryotes within a Shallow-Water Pockmark Field. Frontiers in Microbiology, June 17, 2016. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4911944/

 

  • Andrew Romero-Wolf, Dustin M. Schroeder, Paul Ries, Bruce G. Bills, Charles Naudet, Bryan R. Scott, Robert Treuhaft, & Steve Vance. Prospects of Passive Radio Detection of a Subsurface Ocean on Europa with a Lander. arXiv:1602.06016 [astro-ph.EP], June 15, 2016. https://arxiv.org/abs/1602.06016

 

 

  • Jennifer F. Hoyal Cuthill, Kim B. Sewell, Lester R.G. Cannon, Michael A Charleston, Susan Lawler, D. Timothy J. Littlewood, Peter D. Olson, & David Blair. Australian spiny mountain crayfish and their temnocephalan ectosymbionts: an ancient association on the edge of coextinction? Proceedings of the Royal Society B, May 25, 2016. http://rspb.royalsocietypublishing.org/content/283/1831/20160585

 

 

  • Donato Giovannelli, Matthew Chung, Justin Stanley, Valentin Starovoytov, Nadine Le Bris, and Costantino Vetriani. Sulfurovum riftiae sp. nov., a mesophilic, thiosulfate-oxidizing, nitrate-reducing chemolithoautotrophic Epsilonproteobacterium isolated from the tube of the deep-sea hydrothermal vent polychaete, Riftia pachyptila. International Journal of Systematic Evolutionary Biology, April 26, 2016. https://www.ncbi.nlm.nih.gov/pubmed/27116914

 

  • Alberto G. Fairen, James M. Dohm, J. Alexis P., Esther R. Uceda, Jeffrey Kargel, Richard Soare, H. James Cleaves, Dorothy Oehler, Dirk Schulze-Makuch, Elhoucine Essefi, Maria E. Banks, Goro Komatsu, Wolfgang Fink, Stuart Robbins, Jianguo Yan, Hideaki Miyamoto, Shigenori Maruyama, and Victor R. Baker. The Argyre Region as a Prime Target for in situ Astrobiology Exploration of Mars. Astrobiology, Feb. 2016. http://online.liebertpub.com/doi/abs/10.1089/ast.2015.1396

 

  • Jun Wang, Peter V. Bonnesen, E. Rangel, E. Vallejo, Ariadna Sanchez-Castillo, H. James Cleaves II, Arthur P. Baddorf, Bobby G. Sumpter, Minghu Pan, Petro Maksymovych & Miguel Fuentes-Cabrera. Supramolecular polymerization of a prebiotic nucleoside provides insights into the creation of sequence-controlled polymers. Scientific Reports, Jan. 4, 2016. http://www.nature.com/articles/srep18891

 

 

  • Caleb Scharf, Nathaniel Virgo, H. James Cleaves, II, Masashi Aono, Nathanael Aubert-Kato,  Arsev Aydinoglu, Ana Barahona, Laura M. Barge, Steven A. Benner, Martin Biehl, Ramon Brasser, Christopher J. Butch, Kuhan Chandru, Leroy Cronin, Sebastian Danielache, Jakob Fischer, John Hernlund, Piet Hut, Takashi Ikegami, Jun Kimura, Kensei Kobayashi, Carlos Mariscal, Shawn McGlynn, Brice Menard, Norman Packard, Robert Pascal, Juli Pereto, Sudha Rajamani, Lana Sinapayen, Eric Smith, Christopher Switzer, Ken Takai, Feng Tian, Yuichiro Ueno, Mary Voytek, Olaf Witkowski, and Hikaru Yabuta. A Strategy for Origins of Life Research. Astrobiology, Vol. 28, No. 12. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4683543/

 

  • Herve Cottin, Julia Michelle Kotler, Kristin Bartik, H. James Cleaves II, Charles S. Cockell, Jean-Pierre P. de Vera, Pascale Ehrenfreund, Stefan Leuko, Inge Loes Ten Kate, Zita Martins, Robert Pascal, Richard Quinn, Petra Rettberg, & Frances Westall. Astrobiology and the Possibility of Life on Earth and Elsewhere… Space Science Reviews, Sept. 2015. http://link.springer.com/article/10.1007/s11214-015-0196-1